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PAINT (V 3.9): Feasnet Builder
Upstreamer:
Fetch upstream sequences using gene identifiers:
[
Help
]
Organism:
Homo Sapiens (human)
Mus Musculus (mouse)
Rattus Norvegicus (rat)
Desired upstream length:
500
1000
1500
2000
2500
3000
3500
4000
4500
5000
base pairs.
Gene Identifier type:
Genbank Accession Number
Clone ID
Entrez Gene ID (Locuslink)
Ensembl Gene ID
Upload
plain text
file of type
Gene Identifiers list
Upstream sequences (FASTA format)
:
(NOT Word/RTF/Excel/PDF/HTML/ZIP files)
[
File Format
]
TF Retriever:
Find Transcription Factor binding sequences (TREs) on gene upstream sequences:
[
Help
]
TRE finding program:
Match (TRANSFAC Public)
Match (TRANSFAC Professional v 2009.2)
Login information for this web based TRE finding program:
(NOT the DBIWeb username/password.)
TRANSFAC Public:
Free registration at www.gene-regulation.com
TRANSFAC Pro:
Purchase License at www.biobase-international.com
Username:
Password:
MATCH filter option:
Minimize False Positives
Core similarity threshold:
1.00
0.95
0.90
Find TREs on complementary strand?
PAINT Home
|| Feasnet Builder ||
Feasnet Analysis and Visualization
||
Documentation
||
Example
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